PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0057s00530.1
Common NameLR48_Vigan03g315900
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 271aa    MW: 30283.8 Da    PI: 6.8719
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0057s00530.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.28.7e-184998255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                      +y+GVr+++ +gr++AeIrdp     +  r +lg+f+taeeAa a++ a+++++g
  Vang0057s00530.1 49 RYRGVRRRP-WGRYAAEIRDPQ----SkERRWLGTFDTAEEAACAYDCAARAMRG 98
                      59*******.**********93....35999**********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.83E-2149106IPR016177DNA-binding domain
PfamPF008472.5E-114998IPR001471AP2/ERF domain
CDDcd000188.87E-3049105No hitNo description
PROSITE profilePS5103222.11549106IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-2949105IPR001471AP2/ERF domain
SMARTSM003801.7E-3349112IPR001471AP2/ERF domain
PRINTSPR003671.2E-95061IPR001471AP2/ERF domain
PRINTSPR003671.2E-97288IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MEEAMRRLNG VAPILGPDPK ESSVVENPKR STAVNKRTLR EDGGGGAMRY RGVRRRPWGR  60
YAAEIRDPQS KERRWLGTFD TAEEAACAYD CAARAMRGLK ARTNFVYPTS PQASSATADH  120
FFHSFSDDDS GSGFFSRESS DSGLLEEIVN KFLPKAKPNK CESLPKMESV RNPQESVLPS  180
LISESTLVST AQCYDDTKKG FHKNESFGFS FDHQGLPMQK FDNFNGFHHL QGMAMGNEQT  240
MTNHAENCIV EDVFQYQELL NSFAIRMQNA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-1750105662ATERF1
3gcc_A3e-1750105662ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00623PBMTransfer from PK19363.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007158394.11e-86hypothetical protein PHAVU_002G149500g
TrEMBLA0A0L9UB371e-100A0A0L9UB37_PHAAN; Uncharacterized protein
TrEMBLA0A0S3T3031e-100A0A0S3T303_PHAAN; Uncharacterized protein
STRINGGLYMA01G03110.24e-72(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41003256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.12e-14DORNROSCHEN-like
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]